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GrainGenes Marker Report: POPA2_0644

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Locus	POPA2_0644
Type	SNP
Synonym	Other name 11_20644 BOPA1_11_20644 BOPA1_3919-112 Synonym 11_20644
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPAConsensus-2011-5H 164.15
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_16595 i_11_20644
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0644 Marker name in barley OPA1 = 11_20644 Original SNP name = 3919-112 Most representative HarvEST:Barley Assembly #32 Unigene = 3919 Most representative HarvEST:Barley Assembly #35 Unigene = 16595 HarvEST Unigene 35 Probe Set = HK06N02r_s_at Unigene 35 Rice Locus = LOC_Os03g61150 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 3E-28 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_16595
Locus	POPA2_0644