GrainGenes Marker Report: POPA2_0652
Locus
POPA2_0652
Type
SNP
Synonym
Synonym 11_20652
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H 110.99 Hordeum-OPA123-2008-7H 110.99 Hordeum-OPAConsensus-2011-7H 111.15
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_2036
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0652 Marker name in barley OPA1 = 11_20652 Original SNP name = 3981-469 Most representative HarvEST:Barley Assembly #32 Unigene = 3981 Most representative HarvEST:Barley Assembly #35 Unigene = 2036 HarvEST Unigene 35 Probe Set = Contig5570_s_at Unigene 35 Rice Locus = LOC_Os06g47220 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-43 Marker name in barley Pilot OPA2 = 2_0652 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-43 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_2036
Locus
POPA2_0652
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0652
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