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GrainGenes Marker Report: POPA2_0663

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Locus	POPA2_0663
Type	SNP
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Core-2014_5H 180.54 Hordeum-OPA-2009-5H 191.97 Hordeum-OPA123-2008-5H 191.97 Hordeum-OPAConsensus-2011-5H 187.2
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_2190
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0663 Most representative HarvEST:Barley Assembly #32 Unigene = 4028 Most representative HarvEST:Barley Assembly #35 Unigene = 2190 HarvEST Unigene 35 Probe Set = Contig5612_at; Contig5612_s_at Unigene 35 Rice Locus = LOC_Os12g27830 Description for best rice BLAST hit to Unigene 35 member = corticosteroid 11-beta-dehydrogenase isozyme 1, putative, expressed; E value = 1E-172 Marker name in barley Pilot OPA2 = 2_0663 Original SNP name = 4028-855 HarvEST Unigene 35 Probe Set = Contig5612_at, Contig5612_s_at Description for best rice BLAST hit to Unigene 35 member = protein corticosteroid 11-beta-dehydrogenase isozyme 1, putative, expressed; E value = 1E-172 BLAST hit in the rice genome = corticosteroid 11-beta-dehydrogenase isozyme 1, putative, expressed
Probe for Locus	HAR35_2190
Locus	POPA2_0663
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare