GrainGenes Marker Report: POPA2_0665
Locus
POPA2_0665
Type
SNP
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Core-2014_1H 11.7 Hordeum-OPA-2009-1H 10.67 Hordeum-OPA123-2008-1H 10.67 Hordeum-OPAConsensus-2011-1H 10.69
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_906
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0665 Most representative HarvEST:Barley Assembly #32 Unigene = 40 Most representative HarvEST:Barley Assembly #35 Unigene = 906 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os12g36210 Description for best rice BLAST hit to Unigene 35 member = subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed; E value = 2E-24 Marker name in barley Pilot OPA2 = 2_0665 Original SNP name = 40-320 Original SNP name = SCRI_bbc05112_01_1 Description for best rice BLAST hit to Unigene 35 member = protein subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed; E value = 2E-24 BLAST hit in the rice genome = subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
Probe for Locus
HAR35_906
Locus
POPA1_0587 POPA2_0665
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0665
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