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GrainGenes Marker Report: POPA2_0666

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Locus	POPA2_0666
Type	SNP
Synonym	Synonym 11_20666
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 43.23 Hordeum-OPA123-2008-3H 43.23 Hordeum-OPAConsensus-2011-3H 48.02
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16592
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0666 Marker name in barley OPA1 = 11_20666 Original SNP name = 4035-99 Most representative HarvEST:Barley Assembly #32 Unigene = 4035 Most representative HarvEST:Barley Assembly #35 Unigene = 16592 HarvEST Unigene 35 Probe Set = Contig5645_at Unigene 35 Rice Locus = LOC_Os01g07250 Description for best rice BLAST hit to Unigene 35 member = saposin-like type B, region 1 family protein, expressed; E value = 1E-84 Marker name in barley Pilot OPA2 = 2_0666 Description for best rice BLAST hit to Unigene 35 member = protein saposin-like type B, region 1 family protein, expressed; E value = 1E-84 BLAST hit in the rice genome = saposin-like type B, region 1 family protein, expressed
Probe for Locus	HAR35_16592
Locus	POPA2_0666
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare