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GrainGenes Marker Report: POPA2_0668

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Locus	POPA2_0668
Type	SNP
Synonym	Other name 11_20668 BOPA1_11_20668 BOPA1_4047-898 Synonym 11_20668
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPAConsensus-2011-4H 145.7
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_16346 i_11_20668
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0668 Marker name in barley OPA1 = 11_20668 Original SNP name = 4047-898 Most representative HarvEST:Barley Assembly #32 Unigene = 4047 Most representative HarvEST:Barley Assembly #35 Unigene = 16346 HarvEST Unigene 35 Probe Set = Contig5731_at; HVSMEf0006D15r2_s_at Unigene 35 Rice Locus = LOC_Os03g01810 Description for best rice BLAST hit to Unigene 35 member = charged multivesicular body protein 3, putative, expressed; E value = 1E-111 BLAST hit in the rice genome = charged multivesicular body protein 3, putative, expressed
Probe for Locus	HAR35_16346
Locus	POPA2_0668