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GrainGenes Marker Report: POPA2_0671

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Locus
POPA2_0671
Type
SNP
Synonym
Other name11_20671
BOPA1_11_20671
BOPA1_4054-1326
Synonym11_20671
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H68.46
Hordeum-OPA123-2008-7H68.46
Hordeum-OPAConsensus-2011-7H64.98
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16339
i_11_20671
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0671
Marker name in barley OPA1 = 11_20671
Original SNP name = 4054-1326
Most representative HarvEST:Barley Assembly #32 Unigene = 4054
Most representative HarvEST:Barley Assembly #35 Unigene = 16339
HarvEST Unigene 35 Probe Set = Contig5632_at; Contig5632_s_at; baal35a07_x_at
Unigene 35 Rice Locus = LOC_Os06g12310
Description for best rice BLAST hit to Unigene 35 member = aquaporin NIP4.1, putative, expressed; E value = 1E-146
Marker name in barley Pilot OPA2 = 2_0671
HarvEST Unigene 35 Probe Set = Contig5632_at, Contig5632_s_at, baal35a07_x_at
Description for best rice BLAST hit to Unigene 35 member = protein aquaporin NIP4.1, putative, expressed; E value = 1E-146
BLAST hit in the rice genome = aquaporin NIP4.1, putative, expressed


Probe for Locus
HAR35_16339
Locus
POPA2_0671
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare