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GrainGenes Marker Report: POPA2_0684

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Locus	POPA2_0684
Type	SNP
Synonym	Other name 12_20684 BOPA2_12_20684 Synonym 12_20684
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 109.73 Hordeum-OPA123-2008-7H 109.73 Hordeum-OPAConsensus-2011-7H 109.99
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16172 i_12_20684
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0684 Marker name in barley OPA1 = 12_20684 Original SNP name = 4113-1389 Most representative HarvEST:Barley Assembly #32 Unigene = 4113 Most representative HarvEST:Barley Assembly #35 Unigene = 16172 HarvEST Unigene 35 Probe Set = Contig5862_at Unigene 35 Rice Locus = LOC_Os06g47340 Marker name in barley Pilot OPA2 = 2_0684 Marker name in barley OPA2 = 12_20684 Description for best rice BLAST hit to Unigene 35 member = protein glycosyltransferase, putative, expressed; E value = 0 BLAST hit in the rice genome = glycosyltransferase, putative, expressed
Probe for Locus	HAR35_16172
Locus	POPA2_0684
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare