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GrainGenes Marker Report: POPA2_0689

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Locus	POPA2_0689
Type	SNP
Synonym	Other name 11_20689 BOPA1_11_20689 BOPA1_4133-601 Synonym 11_20689
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 81.1 Hordeum-OPA-2009-4H 84.3 Hordeum-OPA123-2008-4H 84.3 Hordeum-OPAConsensus-2011-4H 93.08
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16825 i_11_20689
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0689 Marker name in barley OPA1 = 11_20689 Original SNP name = 4133-601 Most representative HarvEST:Barley Assembly #32 Unigene = 4133 Most representative HarvEST:Barley Assembly #35 Unigene = 16825 HarvEST Unigene 35 Probe Set = Contig5720_at Unigene 35 Rice Locus = LOC_Os03g07870 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-24 Marker name in barley Pilot OPA2 = 2_0689 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-24 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_16825
Locus	POPA2_0689
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare