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GrainGenes Marker Report: POPA2_0699

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Locus
POPA2_0699
Type
SNP
Synonym
Other name11_20699
BOPA1_11_20699
BOPA1_4164-176
Synonym11_20699
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H78.03
Hordeum-OPA123-2008-2H78.03
Hordeum-OPAConsensus-2011-2H91.11
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1852
i_11_20699
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0699
Marker name in barley OPA1 = 11_20699
Original SNP name = 4164-176
Most representative HarvEST:Barley Assembly #32 Unigene = 4164
Most representative HarvEST:Barley Assembly #35 Unigene = 1852
HarvEST Unigene 35 Probe Set = Contig5841_at
Unigene 35 Rice Locus = LOC_Os04g43680
Description for best rice BLAST hit to Unigene 35 member = myb-related protein Myb4, putative, expressed; E value = 1E-100
Marker name in barley Pilot OPA2 = 2_0699
Description for best rice BLAST hit to Unigene 35 member = protein myb-related protein Myb4, putative, expressed; E value = 1E-100
BLAST hit in the rice genome = myb-related protein Myb4, putative, expressed


Probe for Locus
HAR35_1852
Locus
POPA2_0699
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare