GrainGenes Marker Report: POPA2_0704
Locus
POPA2_0704
Type
SNP
Synonym
Other name 11_20704 BOPA1_11_20704 BOPA1_4184-393 Synonym 11_20704
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H 57.1 Hordeum-OPA-2009-3H 65.52 Hordeum-OPA123-2008-3H 65.52 Hordeum-OPAConsensus-2011-3H 76.43
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16771 i_11_20704
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0704 Marker name in barley OPA1 = 11_20704 Original SNP name = 4184-393 Most representative HarvEST:Barley Assembly #32 Unigene = 4184 Most representative HarvEST:Barley Assembly #35 Unigene = 16771 HarvEST Unigene 35 Probe Set = Contig5854_s_at Unigene 35 Rice Locus = LOC_Os01g51300 Description for best rice BLAST hit to Unigene 35 member = WD-40 repeat protein MSI4, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0704 Description for best rice BLAST hit to Unigene 35 member = protein WD-40 repeat protein MSI4, putative, expressed; E value = 0 BLAST hit in the rice genome = WD-40 repeat protein MSI4, putative, expressed
Probe for Locus
HAR35_16771
Locus
POPA2_0704
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0704
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