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GrainGenes Marker Report: POPA2_0733

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Locus	POPA2_0733
Type	SNP
Synonym	Synonym 11_20733
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 112.32 Hordeum-OPA123-2008-6H 112.32 Hordeum-OPAConsensus-2011-6H 122.74
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16792
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0733 Marker name in barley OPA1 = 11_20733 Original SNP name = 4374-609 Most representative HarvEST:Barley Assembly #32 Unigene = 4374 Most representative HarvEST:Barley Assembly #35 Unigene = 16792 HarvEST Unigene 35 Probe Set = Contig6016_s_at Unigene 35 Rice Locus = LOC_Os02g56210 Description for best rice BLAST hit to Unigene 35 member = mRNA decapping enzyme 2, putative, expressed; E value = 1E-168 Marker name in barley Pilot OPA2 = 2_0733 Original SNP name = U35_6278_408 Description for best rice BLAST hit to Unigene 35 member = protein mRNA decapping enzyme 2, putative, expressed; E value = 1E-168 BLAST hit in the rice genome = mRNA decapping enzyme 2, putative, expressed
Probe for Locus	HAR35_16792
Locus	POPA2_0733
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare