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GrainGenes Marker Report: POPA2_0748

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Locus	POPA2_0748
Type	SNP
Synonym	Synonym 11_20748
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 56.28 Hordeum-OPA123-2008-2H 56.28 Hordeum-OPAConsensus-2011-2H 61.49 Hordeum-OWB-OPA2008-2H 70.578
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_16863
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0748 Marker name in barley OPA1 = 11_20748 Original SNP name = 4467-374 Most representative HarvEST:Barley Assembly #32 Unigene = 4467 Most representative HarvEST:Barley Assembly #35 Unigene = 16863 HarvEST Unigene 35 Probe Set = Contig6174_at Unigene 35 Rice Locus = LOC_Os07g41280 Description for best rice BLAST hit to Unigene 35 member = 6-phosphogluconolactonase, putative, expressed; E value = 1E-142 Marker name in barley Pilot OPA2 = 2_0748 Description for best rice BLAST hit to Unigene 35 member = protein 6-phosphogluconolactonase, putative, expressed; E value = 1E-142 BLAST hit in the rice genome = 6-phosphogluconolactonase, putative, expressed
Probe for Locus	HAR35_16863
Locus	POPA2_0748
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare