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GrainGenes Marker Report: POPA2_0760

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Locus	POPA2_0760
Type	SNP
Synonym	Synonym 12_20760
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 118.34 Hordeum-OPA123-2008-4H 118.34 Hordeum-OPAConsensus-2011-4H 138.7 Hordeum-OWB-OPA2008-4H 113.95
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_17106
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0760 Marker name in barley OPA1 = 12_20760 Original SNP name = 4531-427 Most representative HarvEST:Barley Assembly #32 Unigene = 4531 Most representative HarvEST:Barley Assembly #35 Unigene = 17106 HarvEST Unigene 35 Probe Set = Contig6169_at; Contig6170_s_at; HVSMEb0002K02r2_s_at Unigene 35 Rice Locus = LOC_Os01g01840 Description for best rice BLAST hit to Unigene 35 member = helix-loop-helix DNA-binding domain containing protein, expressed; E value = 4E-42 Marker name in barley Pilot OPA2 = 2_0760 Marker name in barley OPA2 = 12_20760 HarvEST Unigene 35 Probe Set = Contig6169_at, Contig6170_s_at, HVSMEb0002K02r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein helix-loop-helix DNA-binding domain containing protein, expressed; E value = 4E-42 BLAST hit in the rice genome = helix-loop-helix DNA-binding domain containing protein, expressed
Probe for Locus	HAR35_17106
Locus	POPA2_0760 POPA1_0664
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare