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GrainGenes Marker Report: POPA2_0769

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Locus
POPA2_0769
Type
SNP
Synonym
Other name11_20769
BOPA1_11_20769
BOPA1_4578-899
Synonym11_20769
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H96.92
Hordeum-OPA123-2008-1H96.92
Hordeum-OPAConsensus-2011-1H92.43
Hordeum-OWB-OPA2008-1H101.94
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_2823
i_11_20769
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0769
Marker name in barley OPA1 = 11_20769
Original SNP name = 4578-899
Most representative HarvEST:Barley Assembly #32 Unigene = 4578
Most representative HarvEST:Barley Assembly #35 Unigene = 2823
HarvEST Unigene 35 Probe Set = Contig6416_s_at
Unigene 35 Rice Locus = LOC_Os05g35540
Description for best rice BLAST hit to Unigene 35 member = GTPase, putative, expressed; E value = 1E-169
Marker name in barley Pilot OPA2 = 2_0769
Description for best rice BLAST hit to Unigene 35 member = protein GTPase, putative, expressed; E value = 1E-169
BLAST hit in the rice genome = GTPase, putative, expressed


Probe for Locus
HAR35_2823
Locus
POPA2_0769
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare