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GrainGenes Marker Report: POPA2_0770

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Locus	POPA2_0770
Type	SNP
Synonym	Other name 12_20770 BOPA2_12_20770 Synonym 12_20770
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 42.32 Hordeum-OPA123-2008-5H 42.32 Hordeum-OPAConsensus-2011-5H 35.88
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2593 i_12_20770
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0770 Marker name in barley OPA1 = 12_20770 Original SNP name = 4586-536 Most representative HarvEST:Barley Assembly #32 Unigene = 4586 Most representative HarvEST:Barley Assembly #35 Unigene = 2593 HarvEST Unigene 35 Probe Set = Contig6441_s_at; Contig6442_at Unigene 35 Rice Locus = LOC_Os12g41800 Description for best rice BLAST hit to Unigene 35 member = VTC2, putative, expressed; E value = 1E-147 Marker name in barley Pilot OPA2 = 2_0770 Marker name in barley OPA2 = 12_20770 HarvEST Unigene 35 Probe Set = Contig6441_s_at, Contig6442_at Description for best rice BLAST hit to Unigene 35 member = protein VTC2, putative, expressed; E value = 1E-147 BLAST hit in the rice genome = VTC2, putative, expressed
Probe for Locus	HAR35_2593
Locus	POPA2_0770
Synonym	Synonym ABG397
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare