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GrainGenes Marker Report: POPA2_0781

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Locus	POPA2_0781
Type	SNP
Synonym	Other name 11_20781 BOPA1_11_20781 BOPA1_4629-162 Synonym 11_20781
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 83.82 Hordeum-OPA123-2008-2H 83.82 Hordeum-OPAConsensus-2011-2H 96.23
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16046 i_11_20781
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0781 Marker name in barley OPA1 = 11_20781 Original SNP name = 4629-162 Most representative HarvEST:Barley Assembly #32 Unigene = 4629 Most representative HarvEST:Barley Assembly #35 Unigene = 16046 HarvEST Unigene 35 Probe Set = Contig6320_at; HS09E20r_s_at Unigene 35 Rice Locus = LOC_Os04g45090 Description for best rice BLAST hit to Unigene 35 member = cytochrome b561, putative, expressed; E value = 1E-115 Marker name in barley Pilot OPA2 = 2_0781 HarvEST Unigene 35 Probe Set = Contig6320_at, HS09E20r_s_at Description for best rice BLAST hit to Unigene 35 member = protein cytochrome b561, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = cytochrome b561, putative, expressed
Probe for Locus	HAR35_16046
Locus	POPA2_0781
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare