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GrainGenes Marker Report: POPA2_0783

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Locus	POPA2_0783
Type	SNP
Synonym	Other name 11_20783 BOPA1_11_20783 BOPA1_4641-266 Synonym 11_20783
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 88.9 Hordeum-OPA123-2008-6H 88.9 Hordeum-OPAConsensus-2011-6H 100.68
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16831 i_11_20783
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0783 Marker name in barley OPA1 = 11_20783 Original SNP name = 4641-266 Most representative HarvEST:Barley Assembly #32 Unigene = 4641 Most representative HarvEST:Barley Assembly #35 Unigene = 16831 HarvEST Unigene 35 Probe Set = Contig6408_at Unigene 35 Rice Locus = LOC_Os02g52920 Description for best rice BLAST hit to Unigene 35 member = transmembrane emp24 domain-containing protein 10 precursor, putative, expressed; E value = 1E-99 Marker name in barley Pilot OPA2 = 2_0783 Description for best rice BLAST hit to Unigene 35 member = protein transmembrane emp24 domain-containing protein 10 precursor, putative, expressed; E value = 1E-99 BLAST hit in the rice genome = transmembrane emp24 domain-containing protein 10 precursor, putative, expressed
Probe for Locus	HAR35_16831
Locus	POPA2_0783
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare