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GrainGenes Marker Report: POPA2_0791

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Locus
POPA2_0791
Type
SNP
Synonym
Other name11_20791
BOPA1_11_20791
BOPA1_4686-1281
Synonym11_20791
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H149.64
Hordeum-OPA123-2008-5H149.64
Hordeum-OPAConsensus-2011-5H145.9
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16877
i_11_20791
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0791
Marker name in barley OPA1 = 11_20791
Original SNP name = 4686-1281
Most representative HarvEST:Barley Assembly #32 Unigene = 4686
Most representative HarvEST:Barley Assembly #35 Unigene = 16877
HarvEST Unigene 35 Probe Set = Contig6506_s_at; Contig6507_at
Unigene 35 Rice Locus = LOC_Os03g57870
Description for best rice BLAST hit to Unigene 35 member = replication factor C subunit 5, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0791
HarvEST Unigene 35 Probe Set = Contig6506_s_at, Contig6507_at
Description for best rice BLAST hit to Unigene 35 member = protein replication factor C subunit 5, putative, expressed; E value = 0
BLAST hit in the rice genome = replication factor C subunit 5, putative, expressed


Probe for Locus
HAR35_16877
Locus
POPA2_0791
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare