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GrainGenes Marker Report: POPA2_0796

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Locus
POPA2_0796
Type
SNP
Synonym
Other name11_20796
BOPA1_11_20796
BOPA1_4707-421
Synonym11_20796
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H56.4
Hordeum-OPA123-2008-3H56.4
Hordeum-OPAConsensus-2011-3H67.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16907
i_11_20796
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0796
Marker name in barley OPA1 = 11_20796
Original SNP name = 4707-421
Most representative HarvEST:Barley Assembly #32 Unigene = 4707
Most representative HarvEST:Barley Assembly #35 Unigene = 16907
HarvEST Unigene 35 Probe Set = Contig6573_at; HY08H20u_s_at
Unigene 35 Rice Locus = LOC_Os01g38480
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 3E-76
Marker name in barley Pilot OPA2 = 2_0796
HarvEST Unigene 35 Probe Set = Contig6573_at, HY08H20u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 3E-76
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_16907
Locus
POPA2_0796
Synonym
SynonymBCD134
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare