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GrainGenes Marker Report: POPA2_0797

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Locus	POPA2_0797
Type	SNP
Synonym	Other name 11_20797 BOPA1_11_20797 BOPA1_4715-810 Synonym 11_20797
Chromosome	3H
Chromosome Arm	3HS
Map	Barley, 2012 9KSNP 3H 1.6 Hordeum-OPA-2009-3H 2.29 Hordeum-OPA123-2008-3H 2.29 Hordeum-OPAConsensus-2011-3H 5.36 Hordeum-OWB-OPA2008-3H 3.285
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3015 i_11_20797
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0797 Marker name in barley OPA1 = 11_20797 Original SNP name = 4715-810 Most representative HarvEST:Barley Assembly #32 Unigene = 4715 Most representative HarvEST:Barley Assembly #35 Unigene = 3015 HarvEST Unigene 35 Probe Set = Contig6604_at; Contig6604_s_at Unigene 35 Rice Locus = LOC_Os01g02120 Description for best rice BLAST hit to Unigene 35 member = OsMFT2 - Rice MFT-Like2 homogous to Arabidopsis Mother of FT and TFL1 gene, expressed; E value = 4E-71 Marker name in barley Pilot OPA2 = 2_0797 HarvEST Unigene 35 Probe Set = Contig6604_at, Contig6604_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsMFT2 - Rice MFT-Like2 homogous to Arabidopsis Mother of FT and TFL1 gene, expressed; E value = 4E-71 BLAST hit in the rice genome = OsMFT2 - Rice MFT-Like2 homogous to Arabidopsis Mother of FT and TFL1 gene, expressed
Probe for Locus	HAR35_3015
Locus	POPA2_0797
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare