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GrainGenes Marker Report: POPA2_0805

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Locus
POPA2_0805
Type
SNP
Synonym
Other name11_20805
BOPA1_11_20805
BOPA1_4771-380
Synonym11_20805
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H110.26
Hordeum-OPA123-2008-5H110.26
Hordeum-OPAConsensus-2011-5H103.01
Hordeum-OWB-OPA2008-5H129.292
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_2664
i_11_20805
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0805
Marker name in barley OPA1 = 11_20805
Original SNP name = 4771-380
Most representative HarvEST:Barley Assembly #32 Unigene = 4771
Most representative HarvEST:Barley Assembly #35 Unigene = 2664
HarvEST Unigene 35 Probe Set = Contig6598_at
Unigene 35 Rice Locus = LOC_Os09g35810
Description for best rice BLAST hit to Unigene 35 member = NC domain containing protein, expressed; E value = 1E-133
Marker name in barley Pilot OPA2 = 2_0805
Original SNP name = U35_18576_91
Description for best rice BLAST hit to Unigene 35 member = protein NC domain containing protein, expressed; E value = 1E-133
BLAST hit in the rice genome = NC domain containing protein, expressed


Probe for Locus
HAR35_2664
Locus
POPA2_0805
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare