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GrainGenes Marker Report: POPA2_0830

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Locus	POPA2_0830
Type	SNP
Synonym	Synonym 12_20830
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 146 Hordeum-OPA123-2008-5H 146 Hordeum-OPAConsensus-2011-5H 142.54 Hordeum-OWB-OPA2008-5H 178.303
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_2858
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0830 Marker name in barley OPA1 = 12_20830 Original SNP name = 4852-299 Most representative HarvEST:Barley Assembly #32 Unigene = 4852 Most representative HarvEST:Barley Assembly #35 Unigene = 2858 HarvEST Unigene 35 Probe Set = Contig6808_s_at Unigene 35 Rice Locus = LOC_Os03g56970 Description for best rice BLAST hit to Unigene 35 member = ATARP7, putative, expressed; E value = 1E-135 Marker name in barley Pilot OPA2 = 2_0830 Marker name in barley OPA2 = 12_20830 Description for best rice BLAST hit to Unigene 35 member = protein ATARP7, putative, expressed; E value = 1E-135 BLAST hit in the rice genome = ATARP7, putative, expressed
Probe for Locus	HAR35_2858
Locus	POPA2_0830
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare