GrainGenes Marker Report: POPA2_0842
Locus
POPA2_0842
Type
SNP
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Core-2014_1H 2.44 Hordeum-OPA-2009-1H 0.95 Hordeum-OPA123-2008-1H 0.95 Hordeum-OPAConsensus-2011-1H 3.21
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_16353
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0842 Most representative HarvEST:Barley Assembly #32 Unigene = 4945 Most representative HarvEST:Barley Assembly #35 Unigene = 16353 HarvEST Unigene 35 Probe Set = Contig6721_at; Contig6721_s_at; Contig6723_at Unigene 35 Rice Locus = LOC_Os05g01300 Description for best rice BLAST hit to Unigene 35 member = CHCH domain containing protein, expressed; E value = 3E-68 Marker name in barley Pilot OPA2 = 2_0842 Original SNP name = 4945-592 HarvEST Unigene 35 Probe Set = Contig6721_at, Contig6721_s_at, Contig6723_at Description for best rice BLAST hit to Unigene 35 member = protein CHCH domain containing protein, expressed; E value = 3E-68 BLAST hit in the rice genome = CHCH domain containing protein, expressed
Probe for Locus
HAR35_16353
Locus
POPA2_0842
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0842
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