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GrainGenes Marker Report: POPA2_0877

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Locus	POPA2_0877
Type	SNP
Synonym	Other name 11_20877 BOPA1_11_20877 BOPA1_5128-1831 Synonym 11_20877
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 61.9 Hordeum-OPA-2009-3H 70.71 Hordeum-OPA123-2008-3H 70.71 Hordeum-OPAConsensus-2011-3H 83.8
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16711 i_11_20877
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0877 Marker name in barley OPA1 = 11_20877 Original SNP name = 5128-1831 Most representative HarvEST:Barley Assembly #32 Unigene = 5128 Most representative HarvEST:Barley Assembly #35 Unigene = 16711 HarvEST Unigene 35 Probe Set = Contig7014_at Unigene 35 Rice Locus = LOC_Os01g54080 Description for best rice BLAST hit to Unigene 35 member = ATP binding protein, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0877 Original SNP name = U35_21958_528 Description for best rice BLAST hit to Unigene 35 member = protein ATP binding protein, putative, expressed; E value = 0 BLAST hit in the rice genome = ATP binding protein, putative, expressed
Probe for Locus	HAR35_16711
Locus	POPA2_0877
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare