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GrainGenes Marker Report: POPA2_0881

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Locus	POPA2_0881
Type	SNP
Synonym	Other name 11_20881 BOPA1_11_20881 BOPA1_5146-2119 Synonym 11_20881
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 1.34 Hordeum-OPA123-2008-6H 1.34 Hordeum-OPAConsensus-2011-6H 2.24 Hordeum-OWB-OPA2008-6H 2.198
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2860 i_11_20881
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0881 Marker name in barley OPA1 = 11_20881 Original SNP name = 5146-2119 Most representative HarvEST:Barley Assembly #32 Unigene = 5146 Most representative HarvEST:Barley Assembly #35 Unigene = 2860 HarvEST Unigene 35 Probe Set = Contig7090_s_at Unigene 35 Rice Locus = LOC_Os02g01280 Description for best rice BLAST hit to Unigene 35 member = ruBisCO large subunit-binding protein subunit beta, chloroplast precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0881 Description for best rice BLAST hit to Unigene 35 member = protein ruBisCO large subunit-binding protein subunit beta, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = ruBisCO large subunit-binding protein subunit beta, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_2860
Locus	POPA2_0881 POPA1_0737
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare