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GrainGenes Marker Report: POPA2_0891

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Locus	POPA2_0891
Type	SNP
Synonym	Other name 11_20891 BOPA1_11_20891 BOPA1_5184-1163 Synonym 11_20891
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 56.28 Hordeum-OPA123-2008-2H 56.28 Hordeum-OPAConsensus-2011-2H 61.49
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3000 i_11_20891
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0891 Marker name in barley OPA1 = 11_20891 Original SNP name = 5184-1163 Most representative HarvEST:Barley Assembly #32 Unigene = 5184 Most representative HarvEST:Barley Assembly #35 Unigene = 3000 HarvEST Unigene 35 Probe Set = Contig7196_at; Contig7196_s_at Unigene 35 Rice Locus = LOC_Os07g41080 Description for best rice BLAST hit to Unigene 35 member = hydrolase, alpha/beta fold family protein; E value = 1E-133 Marker name in barley Pilot OPA2 = 2_0891 HarvEST Unigene 35 Probe Set = Contig7196_at, Contig7196_s_at Description for best rice BLAST hit to Unigene 35 member = protein hydrolase, alpha/beta fold family protein; E value = 1E-133 BLAST hit in the rice genome = hydrolase, alpha/beta fold family protein
Probe for Locus	HAR35_3000
Locus	POPA2_0891 POPA1_0743
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare