GrainGenes Marker Report: POPA2_0894
Locus
POPA2_0894
Type
SNP
Synonym
Other name 11_20894 BOPA1_11_20894 BOPA1_5206-787 Synonym 11_20894
Chromosome
5H
Chromosome Arm
5HS
Map
Barley, 2012 9KSNP 5H 0.1 Hordeum-OPA-2009-5H 2.09 Hordeum-OPA123-2008-5H 2.09 Hordeum-OPAConsensus-2011-5H 1.26
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_2783 i_11_20894
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0894 Marker name in barley OPA1 = 11_20894 Original SNP name = 5206-787 Most representative HarvEST:Barley Assembly #32 Unigene = 5206 Most representative HarvEST:Barley Assembly #35 Unigene = 2783 HarvEST Unigene 35 Probe Set = Contig7295_s_at Unigene 35 Rice Locus = LOC_Os03g49150 Description for best rice BLAST hit to Unigene 35 member = protein yippee-like, putative, expressed; E value = 4E-39 Marker name in barley Pilot OPA2 = 2_0894 Description for best rice BLAST hit to Unigene 35 member = protein protein yippee-like, putative, expressed; E value = 4E-39 BLAST hit in the rice genome = protein yippee-like, putative, expressed
Probe for Locus
HAR35_2783
Locus
POPA2_0894 POPA1_0745
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0894
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