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GrainGenes Marker Report: POPA2_0897

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Locus
POPA2_0897
Type
SNP
Synonym
Other name11_20897
BOPA1_11_20897
BOPA1_5219-773
Synonym11_20897
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H182.88
Hordeum-OPA123-2008-5H182.88
Hordeum-OPAConsensus-2011-5H177.9
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_2973
i_11_20897
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0897
Marker name in barley OPA1 = 11_20897
Original SNP name = 5219-773
Most representative HarvEST:Barley Assembly #32 Unigene = 5219
Most representative HarvEST:Barley Assembly #35 Unigene = 2973
HarvEST Unigene 35 Probe Set = Contig7189_at
Unigene 35 Rice Locus = LOC_Os11g28340
Description for best rice BLAST hit to Unigene 35 member = ER lumen protein retaining receptor, putative, expressed; E value = 1E-119
Marker name in barley Pilot OPA2 = 2_0897
Description for best rice BLAST hit to Unigene 35 member = protein ER lumen protein retaining receptor, putative, expressed; E value = 1E-119
BLAST hit in the rice genome = ER lumen protein retaining receptor, putative, expressed


Probe for Locus
HAR35_2973
Locus
POPA2_0897
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare