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GrainGenes Marker Report: POPA2_0905

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Locus	POPA2_0905
Type	SNP
Synonym	Other name 11_20905 BOPA1_11_20905 BOPA1_5254-1845 Synonym 11_20905
Chromosome	2H
Map	Barley, 2012 9KSNP 2H 55.5
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_2888 i_11_20905
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0905 Marker name in barley OPA1 = 11_20905 Original SNP name = 5254-1845 Most representative HarvEST:Barley Assembly #32 Unigene = 5254 Most representative HarvEST:Barley Assembly #35 Unigene = 2888 HarvEST Unigene 35 Probe Set = Contig7136_at Unigene 35 Rice Locus = LOC_Os07g38530 Description for best rice BLAST hit to Unigene 35 member = protein kinase domain containing protein, expressed; E value = 0 BLAST hit in the rice genome = protein kinase domain containing protein, expressed
Probe for Locus	HAR35_2888
Locus	POPA2_0905
Synonym	Synonym BCD1709
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare