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GrainGenes Marker Report: POPA2_0926

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Locus	POPA2_0926
Type	SNP
Synonym	Other name 12_20926 BOPA2_12_20926 Synonym 12_20926
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 149.8 Hordeum-OPA123-2008-7H 149.8
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17446 i_12_20926
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0926 Marker name in barley OPA1 = 12_20926 Original SNP name = 5359-317 Most representative HarvEST:Barley Assembly #32 Unigene = 5359 Most representative HarvEST:Barley Assembly #35 Unigene = 17446 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os07g32420 Description for best rice BLAST hit to Unigene 35 member = DNA binding protein, putative, expressed; E value = 1E-170 Marker name in barley Pilot OPA2 = 2_0926 Marker name in barley OPA2 = 12_20926 Description for best rice BLAST hit to Unigene 35 member = protein DNA binding protein, putative, expressed; E value = 1E-170 BLAST hit in the rice genome = DNA binding protein, putative, expressed
Probe for Locus	HAR35_17446
Locus	POPA2_0926
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare