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GrainGenes Marker Report: POPA2_0952

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Locus	POPA2_0952
Type	SNP
Synonym	Other name 11_20952 BOPA1_11_20952 BOPA1_5520-925 Synonym 11_20952
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPAConsensus-2011-3H 156.42
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_17198 i_11_20952
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0952 Marker name in barley OPA1 = 11_20952 Original SNP name = 5520-925 Most representative HarvEST:Barley Assembly #32 Unigene = 5520 Most representative HarvEST:Barley Assembly #35 Unigene = 17198 HarvEST Unigene 35 Probe Set = Contig7554_s_at Unigene 35 Rice Locus = LOC_Os02g17280 Description for best rice BLAST hit to Unigene 35 member = gamma-secretase subunit APH-1B, putative, expressed; E value = 1E-123 BLAST hit in the rice genome = gamma-secretase subunit APH-1B, putative, expressed
Probe for Locus	HAR35_17198
Locus	POPA2_0952