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GrainGenes Marker Report: POPA2_0962

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Locus	POPA2_0962
Type	SNP
Synonym	Other name 11_20962 BOPA1_11_20962 BOPA1_5595-297 Synonym 11_20962
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 133.9 Hordeum-OPA-2009-7H 149.8 Hordeum-OPA123-2008-7H 149.8 Hordeum-OPAConsensus-2011-7H 152.41 Hordeum-OWB-OPA2008-7H 169.345
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17390 i_11_20962
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0962 Marker name in barley OPA1 = 11_20962 Original SNP name = 5595-297 Most representative HarvEST:Barley Assembly #32 Unigene = 5595 Most representative HarvEST:Barley Assembly #35 Unigene = 17390 HarvEST Unigene 35 Probe Set = Contig7605_s_at; Contig7606_at Unigene 35 Rice Locus = LOC_Os08g20270 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-163 Marker name in barley Pilot OPA2 = 2_0962 HarvEST Unigene 35 Probe Set = Contig7605_s_at, Contig7606_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-163 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_17390
Locus	POPA2_0962
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare