Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0971

[Submit comment/correction]

Locus	POPA2_0971
Type	SNP
Synonym	Other name 11_20971 BOPA1_11_20971 BOPA1_568-1651 Synonym 11_20971
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_469 i_11_20971
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0971 Marker name in barley OPA1 = 11_20971 Original SNP name = 568-1651 Most representative HarvEST:Barley Assembly #32 Unigene = 568 Most representative HarvEST:Barley Assembly #35 Unigene = 469 HarvEST Unigene 35 Probe Set = Contig873_s_at; rbags13d01_s_at Unigene 35 Rice Locus = LOC_Os05g38530 Description for best rice BLAST hit to Unigene 35 member = heat shock cognate 70 kDa protein, putative, expressed; E value = 0 BLAST hit in the rice genome = heat shock cognate 70 kDa protein, putative, expressed
Probe for Locus	HAR35_469
Locus	POPA2_0971 POPA1_0788