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GrainGenes Marker Report: POPA2_0995

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Locus
POPA2_0995
Type
SNP
Synonym
Other name11_20995
BOPA1_11_20995
BOPA1_5785-748
Synonym11_20995
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H52.8
Hordeum-OPA-2009-3H58.64
Hordeum-OPA123-2008-3H58.64
Hordeum-OPAConsensus-2011-3H69.95
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3129
i_11_20995
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0995
Marker name in barley OPA1 = 11_20995
Original SNP name = 5785-748
Most representative HarvEST:Barley Assembly #32 Unigene = 5785
Most representative HarvEST:Barley Assembly #35 Unigene = 3129
HarvEST Unigene 35 Probe Set = Contig7820_s_at; Contig7821_at
Unigene 35 Rice Locus = LOC_Os01g49350
Description for best rice BLAST hit to Unigene 35 member = MAPK activating protein PM28, putative, expressed; E value = 1E-136
Marker name in barley Pilot OPA2 = 2_0995
HarvEST Unigene 35 Probe Set = Contig7820_s_at, Contig7821_at
Description for best rice BLAST hit to Unigene 35 member = protein MAPK activating protein PM28, putative, expressed; E value = 1E-136
BLAST hit in the rice genome = MAPK activating protein PM28, putative, expressed


Probe for Locus
HAR35_3129
Locus
POPA2_0995
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare