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GrainGenes Marker Report: POPA2_1000

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Locus	POPA2_1000
Type	SNP
Synonym	Other name 11_21000 BOPA1_11_21000 BOPA1_5798-867 Synonym 11_21000
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 52.46 Hordeum-OPA123-2008-1H 52.46 Hordeum-OPAConsensus-2011-1H 45.85 Hordeum-OWB-OPA2008-1H 57.714
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3175 i_11_21000
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1000 Marker name in barley OPA1 = 11_21000 Original SNP name = 5798-867 Most representative HarvEST:Barley Assembly #32 Unigene = 5798 Most representative HarvEST:Barley Assembly #35 Unigene = 3175 HarvEST Unigene 35 Probe Set = Contig7692_s_at; Contig7693_at Unigene 35 Rice Locus = LOC_Os10g37899 Description for best rice BLAST hit to Unigene 35 member = transposon protein, putative, unclassified, expressed; E value = 1E-142 Marker name in barley Pilot OPA2 = 2_1000 Original SNP name = U35_19606_774 HarvEST Unigene 35 Probe Set = Contig7692_s_at, Contig7693_at Description for best rice BLAST hit to Unigene 35 member = protein transposon protein, putative, unclassified, expressed; E value = 1E-142 BLAST hit in the rice genome = transposon protein, putative, unclassified, expressed
Probe for Locus	HAR35_3175
Locus	POPA2_1000 POPA1_0802
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare