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GrainGenes Marker Report: POPA2_1002

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Locus	POPA2_1002
Type	SNP
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 11.68 Hordeum-OPA123-2008-3H 11.68
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_17095
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1002 Most representative HarvEST:Barley Assembly #32 Unigene = 5805 Most representative HarvEST:Barley Assembly #35 Unigene = 17095 HarvEST Unigene 35 Probe Set = Contig7855_s_at Unigene 35 Rice Locus = LOC_Os01g03390 Description for best rice BLAST hit to Unigene 35 member = Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed; E value = 5E-31 Marker name in barley Pilot OPA2 = 2_1002 Original SNP name = 5805-604 Description for best rice BLAST hit to Unigene 35 member = protein Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed; E value = 5E-31 BLAST hit in the rice genome = Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
Probe for Locus	HAR35_17095
Locus	POPA2_1002
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare