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GrainGenes Marker Report: POPA2_1004

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Locus	POPA2_1004
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Barley-Core-2014_3H 63.69 Hordeum-OPA-2009-3H 64.19 Hordeum-OPA123-2008-3H 64.19 Hordeum-OPAConsensus-2011-3H 73.3
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_17852
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1004 Most representative HarvEST:Barley Assembly #32 Unigene = 5816 Most representative HarvEST:Barley Assembly #35 Unigene = 17852 HarvEST Unigene 35 Probe Set = Contig7871_at; Contig7871_s_at Unigene 35 Rice Locus = LOC_Os05g46720 Description for best rice BLAST hit to Unigene 35 member = phosphatidylinositol transfer-like protein III, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1004 Original SNP name = 5816-211 Original SNP name = ABC07831_1_419 HarvEST Unigene 35 Probe Set = Contig7871_at, Contig7871_s_at Description for best rice BLAST hit to Unigene 35 member = protein phosphatidylinositol transfer-like protein III, putative, expressed; E value = 0 BLAST hit in the rice genome = phosphatidylinositol transfer-like protein III, putative, expressed
Probe for Locus	HAR35_17852
Locus	POPA2_1004
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare