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GrainGenes Marker Report: POPA2_1015

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Locus	POPA2_1015
Type	SNP
Synonym	Other name 11_21015 BOPA1_11_21015 BOPA1_5880-2547 Synonym 11_21015
Chromosome	2H
Chromosome Arm	2HS
Map	Barley, 2012 9KSNP 2H 23.2 Hordeum-OPA-2009-2H 27.29 Hordeum-OPA123-2008-2H 27.29 Hordeum-OPAConsensus-2011-2H 26
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QTL with Locus Marker	MQTL_Du2024.yield-2H.6
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17375 i_11_21015
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1015 Marker name in barley OPA1 = 11_21015 Original SNP name = 5880-2547 Most representative HarvEST:Barley Assembly #32 Unigene = 5880 Most representative HarvEST:Barley Assembly #35 Unigene = 17375 HarvEST Unigene 35 Probe Set = Contig8053_at Unigene 35 Rice Locus = LOC_Os07g49230 Description for best rice BLAST hit to Unigene 35 member = ubiquitin-activating enzyme E1 3, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1015 Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-activating enzyme E1 3, putative, expressed; E value = 0 BLAST hit in the rice genome = ubiquitin-activating enzyme E1 3, putative, expressed
Probe for Locus	HAR35_17375
Locus	POPA2_1015
Synonym	Synonym BCD1184
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare