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GrainGenes Marker Report: POPA2_1019

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Locus
POPA2_1019
Type
SNP
Synonym
Other name12_21019
BOPA2_12_21019
Synonym12_21019
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_3359
i_12_21019
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 2_1019
Marker name in barley OPA1 = 12_21019
Original SNP name = 5899-1462
Most representative HarvEST:Barley Assembly #32 Unigene = 5899
Most representative HarvEST:Barley Assembly #35 Unigene = 3359
HarvEST Unigene 35 Probe Set = Contig8124_at
Unigene 35 Rice Locus = LOC_Os01g65410
BLAST hit in the rice genome = serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed



Probe for Locus
HAR35_3359
Locus
POPA2_1019