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GrainGenes Marker Report: POPA2_1052

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Locus
POPA2_1052
Type
SNP
Synonym
Other name11_21052
BOPA1_11_21052
BOPA1_6116-709
Synonym11_21052
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H189.6
Hordeum-OPA123-2008-5H189.6
Hordeum-OPAConsensus-2011-5H187.2
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3405
i_11_21052
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1052
Marker name in barley OPA1 = 11_21052
Original SNP name = 6116-709
Most representative HarvEST:Barley Assembly #32 Unigene = 6116
Most representative HarvEST:Barley Assembly #35 Unigene = 3405
HarvEST Unigene 35 Probe Set = Contig8276_at; HVSMEb0014E01r2_s_at
Unigene 35 Rice Locus = LOC_Os03g63420
Description for best rice BLAST hit to Unigene 35 member = OsGrx_S14 - glutaredoxin subgroup II, expressed; E value = 7E-61
Marker name in barley Pilot OPA2 = 2_1052
HarvEST Unigene 35 Probe Set = Contig8276_at, HVSMEb0014E01r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein OsGrx_S14 - glutaredoxin subgroup II, expressed; E value = 7E-61
BLAST hit in the rice genome = OsGrx_S14 - glutaredoxin subgroup II, expressed


Probe for Locus
HAR35_3405
Locus
POPA2_1052
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare