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GrainGenes Marker Report: POPA2_1053

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Locus
POPA2_1053
Type
SNP
Synonym
Other name11_21053
BOPA1_11_21053
BOPA1_6118-595
Synonym11_21053
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H51.6
Hordeum-OPA-2009-1H58.9
Hordeum-OPA123-2008-1H58.9
Hordeum-OPAConsensus-2011-1H51.91
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16434
i_11_21053
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1053
Marker name in barley OPA1 = 11_21053
Original SNP name = 6118-595
Most representative HarvEST:Barley Assembly #32 Unigene = 6118
Most representative HarvEST:Barley Assembly #35 Unigene = 16434
HarvEST Unigene 35 Probe Set =
Unigene 35 Rice Locus = LOC_Os10g41710
Description for best rice BLAST hit to Unigene 35 member = CHL-CPN10, putative, expressed; E value = 9E-57
Marker name in barley Pilot OPA2 = 2_1053
Description for best rice BLAST hit to Unigene 35 member = protein CHL-CPN10, putative, expressed; E value = 9E-57
BLAST hit in the rice genome = CHL-CPN10, putative, expressed


Probe for Locus
HAR35_16434
Locus
POPA2_1053
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare