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GrainGenes Marker Report: POPA2_1057

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Locus
POPA2_1057
Type
SNP
Synonym
Other name11_21057
BOPA1_11_21057
BOPA1_6142-1544
Synonym11_21057
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H71.43
Hordeum-OPA123-2008-1H71.43
Hordeum-OPAConsensus-2011-1H74.81
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3770
i_11_21057
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1057
Marker name in barley OPA1 = 11_21057
Original SNP name = 6142-1544
Most representative HarvEST:Barley Assembly #32 Unigene = 6142
Most representative HarvEST:Barley Assembly #35 Unigene = 3770
HarvEST Unigene 35 Probe Set = Contig8377_at; Contig8378_at
Unigene 35 Rice Locus = LOC_Os11g20500
Description for best rice BLAST hit to Unigene 35 member = conserved hypothetical protein; E value = 0.000002
Marker name in barley Pilot OPA2 = 2_1057
HarvEST Unigene 35 Probe Set = Contig8377_at, Contig8378_at
Description for best rice BLAST hit to Unigene 35 member = protein conserved hypothetical protein; E value = 0.000002
BLAST hit in the rice genome = conserved hypothetical protein


Probe for Locus
HAR35_3770
Locus
POPA2_1057
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare