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GrainGenes Marker Report: POPA2_1068

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Locus
POPA2_1068
Type
SNP
Synonym
Other name11_21068
BOPA1_11_21068
BOPA1_6201-1190
Synonym11_21068
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H126.48
Hordeum-OPA123-2008-1H126.48
Hordeum-OPAConsensus-2011-1H128.04
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3618
i_11_21068
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1068
Marker name in barley OPA1 = 11_21068
Original SNP name = 6201-1190
Most representative HarvEST:Barley Assembly #32 Unigene = 6201
Most representative HarvEST:Barley Assembly #35 Unigene = 3618
HarvEST Unigene 35 Probe Set = Contig8204_at
Unigene 35 Rice Locus = LOC_Os05g48970
Description for best rice BLAST hit to Unigene 35 member = C-terminal zinc-finger, putative, expressed; E value = 3E-45
Marker name in barley Pilot OPA2 = 2_1068
Description for best rice BLAST hit to Unigene 35 member = protein C-terminal zinc-finger, putative, expressed; E value = 3E-45
BLAST hit in the rice genome = C-terminal zinc-finger, putative, expressed


Probe for Locus
HAR35_3618
Locus
POPA2_1068
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare