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GrainGenes Marker Report: POPA2_1070

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Locus
POPA2_1070
Type
SNP
Synonym
Other name11_21070
BOPA1_11_21070
BOPA1_6208-987
Synonym11_21070
Chromosome
4H
Chromosome Arm
4HS
Map
Barley, 2012 9KSNP 4H25.8
Hordeum-OPA-2009-4H26.19
Hordeum-OPA123-2008-4H26.19
Hordeum-OPAConsensus-2011-4H28
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_18075
i_11_21070
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1070
Marker name in barley OPA1 = 11_21070
Original SNP name = 6208-987
Most representative HarvEST:Barley Assembly #32 Unigene = 6208
Most representative HarvEST:Barley Assembly #35 Unigene = 18075
HarvEST Unigene 35 Probe Set = Contig8384_at
Unigene 35 Rice Locus = LOC_Os03g50070
Description for best rice BLAST hit to Unigene 35 member = membrane protein, putative, expressed; E value = 1E-151
Marker name in barley Pilot OPA2 = 2_1070
Description for best rice BLAST hit to Unigene 35 member = protein membrane protein, putative, expressed; E value = 1E-151
BLAST hit in the rice genome = membrane protein, putative, expressed


Probe for Locus
HAR35_18075
Locus
POPA2_1070
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare