Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1072

[Submit comment/correction]

Locus	POPA2_1072
Type	SNP
Synonym	Other name 11_21072 BOPA1_11_21072 BOPA1_6238-243 Synonym 11_21072
Chromosome	1H
Chromosome Arm	1HS
Map	Barley, 2012 9KSNP 1H 37.6 Hordeum-OPA-2009-1H 36.95 Hordeum-OPA123-2008-1H 36.95 Hordeum-OPAConsensus-2011-1H 30.81
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3545 i_11_21072
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1072 Marker name in barley OPA1 = 11_21072 Original SNP name = 6238-243 Most representative HarvEST:Barley Assembly #32 Unigene = 6238 Most representative HarvEST:Barley Assembly #35 Unigene = 3545 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os09g39440 Description for best rice BLAST hit to Unigene 35 member = pyrimidine-specific ribonucleoside hydrolase rihB, putative, expressed; E value = 2E-84 Marker name in barley Pilot OPA2 = 2_1072 Description for best rice BLAST hit to Unigene 35 member = protein pyrimidine-specific ribonucleoside hydrolase rihB, putative, expressed; E value = 2E-84 BLAST hit in the rice genome = pyrimidine-specific ribonucleoside hydrolase rihB, putative, expressed
Probe for Locus	HAR35_3545
Locus	POPA2_1072
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare