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GrainGenes Marker Report: POPA2_1086

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Locus	POPA2_1086
Type	SNP
Synonym	Synonym 11_21086
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 159.27 Hordeum-OPA123-2008-7H 159.27 Hordeum-OPAConsensus-2011-7H 161.39
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_3073
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1086 Marker name in barley OPA1 = 11_21086 Original SNP name = 6316-858 Most representative HarvEST:Barley Assembly #32 Unigene = 6316 Most representative HarvEST:Barley Assembly #35 Unigene = 3073 HarvEST Unigene 35 Probe Set = Contig8443_at; Contig8443_s_at Unigene 35 Rice Locus = LOC_Os06g51250 Description for best rice BLAST hit to Unigene 35 member = calcium ion binding protein, putative, expressed; E value = 2E-41 Marker name in barley Pilot OPA2 = 2_1086 HarvEST Unigene 35 Probe Set = Contig8443_at, Contig8443_s_at Description for best rice BLAST hit to Unigene 35 member = protein calcium ion binding protein, putative, expressed; E value = 2E-41 BLAST hit in the rice genome = calcium ion binding protein, putative, expressed
Probe for Locus	HAR35_3073
Locus	POPA2_1086
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare