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GrainGenes Marker Report: POPA2_1110

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Locus	POPA2_1110
Type	SNP
Synonym	Other name 11_21110 BOPA1_11_21110 BOPA1_6510-1430 Synonym 11_21110
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 60.8 Hordeum-OPA-2009-2H 67.54 Hordeum-OPA123-2008-2H 67.54 Hordeum-OPAConsensus-2011-2H 76.61
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4084 i_11_21110
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1110 Marker name in barley OPA1 = 11_21110 Original SNP name = 6510-1430 Most representative HarvEST:Barley Assembly #32 Unigene = 6510 Most representative HarvEST:Barley Assembly #35 Unigene = 4084 HarvEST Unigene 35 Probe Set = Contig945_s_at; Contig953_at Unigene 35 Rice Locus = LOC_Os07g01480 Description for best rice BLAST hit to Unigene 35 member = oxygen evolving enhancer protein 3 containing protein, expressed; E value = 3E-77 Marker name in barley Pilot OPA2 = 2_1110 HarvEST Unigene 35 Probe Set = Contig945_s_at, Contig953_at Description for best rice BLAST hit to Unigene 35 member = protein oxygen evolving enhancer protein 3 containing protein, expressed; E value = 3E-77 BLAST hit in the rice genome = oxygen evolving enhancer protein 3 containing protein, expressed
Probe for Locus	HAR35_4084
Locus	POPA2_1110
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare