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GrainGenes Marker Report: POPA2_1111

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Locus	POPA2_1111
Type	SNP
Synonym	Other name 11_21111 BOPA1_11_21111 BOPA1_6519-812 Synonym 11_21111
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 102.6 Hordeum-OPA-2009-4H 103.11 Hordeum-OPA123-2008-4H 103.11 Hordeum-OPAConsensus-2011-4H 113.95 Hordeum-OWB-OPA2008-4H 98.561
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3934 i_11_21111
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1111 Marker name in barley OPA1 = 11_21111 Original SNP name = 6519-812 Most representative HarvEST:Barley Assembly #32 Unigene = 6519 Most representative HarvEST:Barley Assembly #35 Unigene = 3934 HarvEST Unigene 35 Probe Set = Contig8416_at; Contig8416_s_at; HZ53P04r_at Unigene 35 Rice Locus = LOC_Os12g23280 Description for best rice BLAST hit to Unigene 35 member = GMFP5, putative, expressed; E value = 2E-77 Marker name in barley Pilot OPA2 = 2_1111 HarvEST Unigene 35 Probe Set = Contig8416_at, Contig8416_s_at, HZ53P04r_at Description for best rice BLAST hit to Unigene 35 member = protein GMFP5, putative, expressed; E value = 2E-77 BLAST hit in the rice genome = GMFP5, putative, expressed
Probe for Locus	HAR35_3934
Locus	POPA2_1111
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare