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GrainGenes Marker Report: POPA2_1117

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Locus	POPA2_1117
Type	SNP
Synonym	Other name 12_21117 BOPA2_12_21117 Synonym 12_21117
Chromosome	4H
Chromosome Arm	4HS
Map	Barley, SFNB QTL 2017 4H 0 Hordeum-OPA-2009-4H 0 Hordeum-OPA123-2008-4H 0 Hordeum-OPAConsensus-2011-4H 0 Hordeum-OWB-OPA2008-4H 0
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, SFNB QTL 2017
Species	Hordeum vulgare
Probe	HAR35_18091 i_12_21117
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1117 Marker name in barley OPA1 = 12_21117 Original SNP name = 6551-419 Most representative HarvEST:Barley Assembly #32 Unigene = 6551 Most representative HarvEST:Barley Assembly #35 Unigene = 18091 HarvEST Unigene 35 Probe Set = Contig8580_s_at; Contig8583_at Unigene 35 Rice Locus = Description for best rice BLAST hit to Unigene 35 member = ; E value = Marker name in barley Pilot OPA2 = 2_1117 Marker name in barley OPA2 = 12_21117 HarvEST Unigene 35 Probe Set = Contig8580_s_at, Contig8583_at
Probe for Locus	HAR35_18091
Locus	POPA2_1117
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare